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I think it would be helpful if you can create a shell script something like ( http://forums.asmallorange.com/topic/13649-shell-script-to-monitor-file-changes/ ) to monitor the file change and send notification to your email.
Note that, if you are using registrar name servers. You should create all your DNS records such as ( A, MX, NS, CNAME... ) at registrar end. I noticed many of them always missing to create MX record and facing mail issues.
Find number of incoming connections to your server (It will help to find the source of DOS attack)
netstat -nut | awk '{print $5}' | cut -d : -f1| sort | uniq -c | sort -n
Find the count of every user process (Better to find cpu abusers)
ps aux | awk '{print $1}' | sort | uniq -c | sort -n |...